Package: coralesce
Title: Group Coral Colonies Based on Genetic Relatedness
Version: 1.0.1
Authors@R: c(
    person("Colin", "Shea", email = "Colin.Shea@MyFWC.com", role = c("aut", "cre")),
    person("Lauren", "Gentry", email = "Lauren.Gentry@MyFWC.com", role = "aut"),
    person("Kristen", "Sauby", email = "Kristen.Sauby@MyFWC.com", role = "aut"))
Description: Assigns coral colonies to clonal groups (genets) from
        single nucleotide polymorphism (SNP) data by comparing alleles
        at each locus across all pairwise combinations of colonies, and
        computes individual- and population-level mean kinship and gene
        diversity (excluding invariant loci). Wrapper functions read
        genotype CSV files from a 'Data' folder and write results to a
        'Results' folder.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Depends: R (>= 3.5.0)
Imports: dplyr, igraph, magrittr, stringi, stringr, tidyr, utils
Suggests: knitr, quarto, rmarkdown, testthat (>= 3.0.0), R.rsp
Config/testthat/edition: 3
LazyData: true
VignetteBuilder: knitr, quarto, R.rsp
Config/pak/sysreqs: libglpk-dev libicu-dev libxml2-dev
Repository: https://colinpshea.r-universe.dev
Date/Publication: 2026-07-10 16:11:43 UTC
RemoteUrl: https://github.com/colinpshea/coralesce
RemoteRef: HEAD
RemoteSha: f1dbeb33520e4137f49fdaac9653b5056e1585bb
NeedsCompilation: no
Packaged: 2026-07-10 16:16:27 UTC; root
Author: Colin Shea [aut, cre],
  Lauren Gentry [aut],
  Kristen Sauby [aut]
Maintainer: Colin Shea <Colin.Shea@MyFWC.com>